A Community for BioMedical Data Analysis Workflows
A collection of workflows and related code snippets.
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Sequence Post-processing Workflow for NNTC HIV env Sequences
Sequence post-processing of NNTC env sequences from brain and lymphoid tissues. SGA consensus sequences used as input to the ...
Alternative Splicing Analysis Using PACBIO Targeted Long-Reads Sequencing Data
This snakemake pipeline is for alternative splicing analysis using PACBIO targed long-reads sequencing data. The pipeline may...
A snakemake workflow for calling extrachromosomal circular DNA in Illumina short-read sequencing data with Circle-Map
A Snakemake workflow for calling extrachromosomal circular DNA in Illumina short-read sequencing data with Circle-Map. The us...
TimeAdapt makes a joint inference of demography and selection from longitudinal population genomic data. The inference is based on approximate Bayesian computation via random forest. It takes whole genome data and information about the ages of samples to p
TimeAdapt makes ( will eventually make ) a joint inference of demography and selection from longitudinal population genom...
Snakemake workflow to perform tandem mass tag (TMT) analysis using the Trans Proteomic Pipeline (TPP)
Snakemake workflow to perform tandem mass tag (TMT) analysis using the Trans Proteomic Pipeline (TPP)
Snakemake pipelines for nanopore sequencing data archiving and processing
Detailed documentation and tutorials are available at readthedocs . Nanopype is a snakemake based pipeline providing conv...
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