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Learning how to use the snakemake pipelining language
A paper that compare the use of a variety of workflows: Followed the tutorial in this page: https://slowkow.com/notes/sna...
RNA-Seq pipeline for bulk, paired-end data
This SnakeMake pipeline processes aligns bulk RNA-Seq datasets using STAR and finds differential gene expression between cond...
A snakemake wrapper around Nesvilab's FragPipe-CLI
_____________ < mspipeline1 > ------------- \ ___......__ _ \ _.-' ~-_ _.=a~~-_ --=====-.-.-_----------~ .--. _ -.__.-~ ( ___...
HRIBO: High-throughput annotation by Ribo-seq workflow for analyzing bacterial Ribo-seq data
We present HRIBO (High-throughput annotation by Ribo-seq), a workflow to enable reproducible and high-throughput analysis of ...
deep mutational scanning of the porcine deltacoronavirus receptor-binding domain
Analysis of deep mutational scanning of barcoded codon variants of yeast-displayed PD-CoV RBD We measured binding of all sing...
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