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Sparse Signaling Pathway Sampling: MCMC for signaling pathway inference
Code related to the manuscript
Inferring signaling pathways with probabilistic programming
(Merrell & Gitter, 2020) B...
Final semester project at the Bioinformatics institute.
Author
Oksana Kotovskaya
Supervisors
Yury Barbitoff (Bioinformatics Institute)
Mikhail Skoblov (Resear...
Snakemake pipeline for single-cell long-read sequencing
This documentation - with additional info - will be hosted here at some point
#clone
git clone --recursive https://github...
Protein MD Setup tutorial using BioExcel Building Blocks (biobb) in Galaxy
Galaxy workflow example that illustrate the process of setting up a simulation system containing a protein, step by step, usi...
Paired-end CUT and RUN data processing workflow designed for execution on the BigPurple HPC. Primary software used: FastQC, Fastp, Bowtie 2, SEACR, MultiQC
This pipeline was written for execution on the NYU big purple server. This readme describes how to execute the snake make wor...
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