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A Snakemake pipeline for variant calling of genomic FASTQ data using GATK
This project is a snakemake workflow for processing .fastq.gz files and downstream analyses. The variant calling is prima...
Neo4j Data Integration and Build Pipeline for EpiGraphDB: Graph Creation from Multiple Data Sources
Neo4j data integration and build pipeline - https://github.com/elswob/neo4j-build-pipeline This pipeline originated from the ...
Secure Data Transfer Workflow for FAIR CRCC: Sharing Crypt4GH-Encrypted Sensitive Data
Snakemake workflow: FAIR CRCC - send data A Snakemake workflow for securely sharing Crypt4GH-encrypted sensitive data from th...
Podacris Genome Annotation (PGA)
TODO: Link manuscript when published This repository contains the code used for annotation scaffold-level assembly of the Ita...
marmoset template building WIP
Workflow to build cohort templates based on multiple participants_tsv files This workflow uses greedy instead of ANTS, for th...
Snakemake template for building reusable and scalable machine learning pipelines with mikropml
Snakemake is a workflow manager
that enables massively parallel and reproducible
analyses.
Snakemake is a suitable tool to...
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