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Example Nextstrain workflow based on public SARS-CoV-2 sequences from GenBank
A demonstration of how to migrate commands for a Nextstrain build from a simple bash shell script to a Snakemake workflow tha...
Performance analyses of classifier ensembles on peptide encodings
Overview image illustrating the performance analyses of classifier ensembles on peptide encodings. An arbitrary number of enc...
StringTie workflow
Abstract CWL Automatically generated from the Galaxy workflow file: Copy of Genome-wide alternative splicing analysis
EJP-RD WP13 case-study: CAKUT peptidome and miRNome data analysis using the DIABLO and PLS-DA methods from the mixOmics R package
For integrative analysis of CAKUT multi-omics data DIABLO method of the mixOmics package (version 6.10.9. Singh et. al. 201...
Plant genome assembly and annotation pipeline using snakemake
This Snakemake pipeline aims for plant genome assembly with HiFi data and genome annotation with RNA-Seq/IsoSeq. Modified fro...
Load ome.zarr Image with labels from a public S3 repository, analyze using StarDist and compare results
The image is referenced in the paper "NesSys: a novel method for accurate nuclear segmentation in 3D" published August 2019 i...
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