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Metatranscriptomics - snakemake pipeline as part of the Bpexa HS Leiden bioinformatics project
DiFlex is a de novo meta-transcriptome assembly and differential gene expression pipeline. For the input the pipeline takes r...
A pipeline for the analysis of CRISPR edited next generation sequencing (NGS) data. CRISPR gene knockouts (KO), CRISPR knock-ins (KI), base editing (BE) and prime editing (PE) experiments
nf-core/crisprseq is a bioinformatics best-practice analysis pipeline for the analysis of CRISPR edited data. It allows th...
Warlock is a snakemake workflow to spawn multiple demons (deme-based oncology models) as jobs running around on a cluster environment 😈😈
demon
(deme-based oncology model) is a flexible framework for modelling intra-tumour population genetics with varied s...
Harmonization of AMR predictor tool outputs
hAMRonization is a project aiming at the harmonization of output file formats of antimicrobial resistance detection tools.
Th...
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