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Snakemake workflow: clinical DICOMs to BIDS
Snakemake workflow to convert a clinical dicom directory into BIDS structure.
dcm2niix (v1.0.20200427)
python require...
Snakemake Pipeline for Raw FASTQ Processing with Terra Compatibility
Here is a snakemake pipeline that processes raw fastq files and outputs several tables for further processing in R. I think a...
AugusMake: Snakemake-Based Gene Annotation Pipeline with Augustus
Guided by a genome file, a transcriptome is de novo assembled with Trinity. It does so using RNA-Seq data provided by the...
pipeline to find unique primer for genome bins in metagenomes
This pipeline designs primers that are unique to a genome/genome bin after metagenome assemlby and binning, which can be furt...
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