A Community for BioMedical Data Analysis Workflows
A collection of workflows and related code snippets.
Suggest a Workflow
Anvi'o Analysis Workflow Using Snakemake
snakemake rules for running anvio This Snakefile will run a basic anvi'o analysis of a set of assemblies and a set of sam...
A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse...
JSON
raw sequence reads
Variant calling
genetic variants
delly
gatk
rust-bio-tools
snakemake-wrapper-utils
tabix
BCFtools
BEDTools
Bowtie 2
BWA
Cutadapt
FastQC
fgbio
FreeBayes
mosdepth
MultiQC
Pandas
Picard
SAMtools
Snakemake
Variant Effect Predictor (VEP)
vembrane
numpy
oschmod
sklearn
statsmodels
Varlociraptor
DNA
Snakemake workflow to consolidate basic genome assembly benchmarking
This is a small snakemake workflow that allows you to quickly gather basic genome assembly statistics so that you can compare...
Snakemake Workflow for SNP Imputation and Annotation
A Snakemake workflow to prepare, annotate and impute SNPs files from 23andMe genotyping platform.
Imputation
Func...
Top Collections
Top Discussions
