Frequency of COVID-19 testing to ensure workplace safety

ictr 1yr ago 0 bookmarks

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In a population where there is a constant threat of community infection, there is a need to test everyone to ensure workplace safety. The goal of this simulation is to determine how many in the cohort would be infected with periodic testing at specified intervals.

Code Snippets

Use covid-19 outbreak simulator to simulate the impact of test frequency on workplace safety, using SoS workflow.

input: for_each=[dict(ps=[10, 20, 30, 40]), dict(ti=[0, 3, 7, 14])]

task: queue='localhost'
sh: expand=True, template_name='conda', env_name='ictr'
    outbreak_simulator --rep 10000 --popsize {ps} --handle-symptomatic remove --stop-if 't>90' --logfile p{ps}_t{ti}.log \
        --plugin community_infection --probability 0.0022 --interval 1  \
        --plugin testing --interval {ti} --proportion 1 --handle-positive remove \
        --plugin stat --at 14 90