Snakemake workflow for automated functional annotation

This is a Snakemake workflow for performing functional annotation of protein sets using eggNOG-mapper v2. eggNOG-mapper is a modern tool for assigning functional annotation using orthology relationships (Cantalapiedra et al., 2021; https://academic.oup.com/mbe/article/38/12/5825/6379734?login=false).

In directory with fasta file(s) run:

conda activate snakemake

snakemake --cores 8 --snakefile Snakefile

Dependencies:

eggnog-mapper https://github.com/eggnogdb/eggnog-mapper

diamond https://github.com/bbuchfink/diamond