COSIFER-COnSensus Interaction Network InFErence Service

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COnSensus Interaction Network InFErence Service

Inference framework for reconstructing networks using a consensus approach between multiple methods and data sources.

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Reference

Manica, Matteo, Charlotte, Bunne, Roland, Mathis, Joris, Cadow, Mehmet Eren, Ahsen, Gustavo A, Stolovitzky, and María Rodríguez, Martínez. "COSIFER: a python package for the consensus inference of molecular interaction networks".Bioinformatics (2020) .

Code Snippets

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"""
cosifer -i "${matrix}" "--sep=${separator}" ${index_col!='' ? '--index ' + index_col : ''}  ${gmt_filepath.name != '.empty.' ? '--gmt_filepath ' + gmt_filepath : ''} -o "resdir" ${samples_on_rows ? '--samples_on_rows' : ''}
"""
NextFlow COSIFER From line 34 of nextflow/nextflow.nf

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Created: 1yr ago
Updated: 1yr ago
Maitainers: public
URL: https://github.com/inab/ipc_workflows/tree/main/cosifer/nextflow
Name: cosifer-1
Version: Version 1
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Copyright: Public Domain
License: Boost Software License 1.0
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