Generic variation analysis on WGS PE data

public public 1yr ago Version: Version 1 0 bookmarks
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generic-variant-calling-wgs-pe-main
generic-variant-calling-wgs-pe-main
generic-variant-calling-wgs-pe-main
generic-variant-calling-wgs-pe-main
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Generic variation analysis on WGS PE data

This workflows performs paired end read mapping with bwa-mem followed by sensitive variant calling across a wide range of AFs with lofreq and variant annotation with snpEff. The reference genome can be provided as a GenBank file.

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Created: 1yr ago
Updated: 1yr ago
Maitainers: public
URL: https://github.com/iwc-workflows/generic-variant-calling-wgs-pe
Name: generic-variant-calling-wgs-pe-main
Version: Version 1
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