Generic variation analysis on WGS PE data
public
1yr ago
Version:
Version 1
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Generic variant calling
A generic workflow for identification of variants in a haploid genome such as genomes of bacteria or viruses. It can be readily used on MonkeyPox. The workflow accepts two inputs:
- A genbank file with the reference genomes
- A collection of paired fastqsanger files
The workflow outputs a collection of VCF files for each sample (each fastq pair). These VCF files serve as input to the Reporting workflow .
Workflow can be accessed directly on usegalaxy.org
The general idea of the workflow is:
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Created: 1yr ago
Updated: 1yr ago
Maitainers:
public
URL:
https://usegalaxy.eu/workflows/trs_import?trs_server=workflowhub.eu&run_form=true&trs_id=353&trs_version=1
Name:
generic-variation-analysis-on-wgs-pe-data
Version:
Version 1
Downloaded:
0
Copyright:
Public Domain
License:
None
Keywords:
- Future updates
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