Partial Reference-Guided Workflow: BWA-MEM Analysis
public
1yr ago
Version:
Version 1
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workflow-partial-bwa-mem
These workflows are part of a set designed to work for RAD-seq data on the Galaxy platform, using the tools from the Stacks program.
Stacks: http://catchenlab.life.illinois.edu/stacks/
This workflow is part of the reference-guided stacks workflow, https://workflowhub.eu/workflows/347
Inputs
- demultiplexed reads in fastq format, may be output from the QC workflow. Files are in a collection.
- reference genome in fasta format
Outputs
- A set of filtered bam files, ready for the next part of the stacks workflow (e.g. gstacks).
- Statistics on the bam files.
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Created: 1yr ago
Updated: 1yr ago
Maitainers:
public
URL:
https://github.com/AnnaSyme/workflow-partial-bwa-mem.git
Name:
partial-ref-guided-workflow-bwa-mem-only
Version:
Version 1
Downloaded:
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Copyright:
Public Domain
License:
None
Keywords:
- Future updates
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