COVID-19: variation analysis on WGS SE data

public public 1yr ago Version: v0.1.3 0 bookmarks
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sars-cov-2-se-illumina-wgs-variant-calling-covid-1
sars-cov-2-se-illumina-wgs-variant-calling-covid-1
sars-cov-2-se-illumina-wgs-variant-calling-covid-1
sars-cov-2-se-illumina-wgs-variant-calling-covid-1
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COVID-19: variation analysis on WGS SE data

This workflows performs single end read mapping with bowtie2 followed by sensitive variant calling across a wide range of AFs with lofreq and variant annotation with snpEff 4.5covid19.

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Created: 1yr ago
Updated: 1yr ago
Maitainers: public
URL: https://github.com/iwc-workflows/sars-cov-2-se-illumina-wgs-variant-calling
Name: sars-cov-2-se-illumina-wgs-variant-calling-covid-1
Version: v0.1.3
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Copyright: Public Domain
License: MIT License
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