Workflow Steps and Code Snippets

1 tagged steps and code snippets that match keyword EnsDb.Hsapiens.v86

Processing pipeline for public multiome and scATAC-seq immune datasets 

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library(Signac)
library(EnsDb.Hsapiens.v86)
library(GenomeInfoDb)

# extract gene annotations from EnsDb
annotations.hg38 <- GetGRangesFromEnsDb(ensdb = EnsDb.Hsapiens.v86)

# change to UCSC style since the data was mapped to hg38
seqlevelsStyle(annotations.hg38) <- 'UCSC'
genome(annotations.hg38) <- "hg38"

# save
saveRDS(object = annotations.hg38, file = "data/annotations_hg38.rds")
R EnsDb.Hsapiens.v86 Signac GenomeInfoDb From line 1 of processing_code/get_annotations.R
data / bioconductor

EnsDb.Hsapiens.v86

Ensembl based annotation package: Exposes an annotation databases generated from Ensembl.

author: Johannes Rainer
library: r:EnsDb.Hsapiens.v86
license: Artistic-2.0
version: 2.99.0
biocViews: ['AnnotationData', 'EnsDb', 'Homo_sapiens']
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