Workflow Steps and Code Snippets
721 tagged steps and code snippets that match keyword MultiQC
Snakemake pipeline for detection limit test from laser-microdissected samples
18 19 20 21 22 23 24 25 26 27 28 29 | shell: """ multiqc \ --title {params.library} \ --force \ --filename {params.library} \ --outdir {params.out_dir} \ --dirs \ --dirs-depth 1 \ {input} \ 2> {log} 1>&2 """ |
13 14 15 16 17 18 19 20 21 22 | shell: """ multiqc \ --filename reads \ --title reads \ --force \ --outdir {params.dir} \ {input} \ 2> {log} 1>&2 """ |
37 38 39 40 41 42 43 44 45 46 | shell: """ multiqc \ --title fastp \ --force \ --filename fastp \ --outdir {params.dir} \ {input} \ 2> {log} 1>&2 """ |
61 62 63 64 65 66 67 68 69 70 71 | shell: """ multiqc \ --title {params.title} \ --force \ --filename {params.title} \ --outdir {params.dir} \ --module kraken \ {input} \ 2> {log} 1>&2 """ |
97 98 99 100 101 102 103 104 105 106 107 108 | shell: """ multiqc \ --title {params.title} \ --force \ --filename {params.title} \ --outdir {params.dir} \ --dirs \ --dirs-depth 1 \ {input.reports} \ 2> {log} 1>&2 """ |
tool / biotools
MultiQC
MultiQC aggregates results from multiple bioinformatics analyses across many samples into a single report. It searches a given directory for analysis logs and compiles a HTML report. It's a general use tool, perfect for summarising the output from numerous bioinformatics tools.