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gr-mediated_gene_repression
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Code for the manuscript "Machine learning reveals STAT motifs as predictors for GR-mediated gene repression"
public

public

TODO: Add citation once paper is accepted Software dependencies
BSgenome.Mmusculus.UCSC.mm10 BSgenome.Mmusculus.UCSC.mm9 org.Mm.eg.db TxDb.Mmusculus.UCSC.mm10.knownGene macs2 biomaRt universalmotif BEDTools Bowtie 2 CAGEr ChIPpeakAnno ChIPseeker ComplexHeatmap Consensus Cutadapt DeepTools DESeq2 FastQC FiMO genomation GenomicRanges MEME memes MultiQC Picard plyranges rtracklayer SAMtools Snakemake topGO circlize data.table dplyr ggplot2 ggpubr glmnet here optparse plsgenomics plyr png RColorBrewer stringr
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