All Published Workflows

2 workflows that have been reviewed and published

signac-paper
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Code to reproduce analyses shown in the Signac paper
public

public

Code to reproduce analyses shown in Stuart et al. 2021, Nature Methods To run the workflow, first create a new conda envi...
BSgenome.Hsapiens.UCSC.hg38 EnsDb.Hsapiens.v75 EnsDb.Mmusculus.v79 macs2 tabix DropletUtils GenomeInfoDb GenomicRanges patcHwork Seurat Signac Snakemake cluster dplyr future ggplot2 Matrix mclust paletteer RANN tidyr SeuratDisk
Free
61
ologram-modl_supp_mat
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Supplementary material for the OLOGRAM-MODL paper
public

public

This is the code accompanying the paper describing OLOGRAM-MODL. It was used to create supplementary files and the paper's fi...
EnsDb.Hsapiens.v75 BEDTools BiocSklearn GenomeInfoDb Pandas patcHwork Pybedtools Seurat Signac Snakemake UpSetR BiocManager dplyr ggplot2 gridExtra plyr RColorBrewer reshape2 stringr matplotlib mlxtend numpy pygtftk scipy seaborn sklearn
Free
47