All Published Workflows
2 workflows that have been reviewed and published
Nanobody-tethered transposition followed by sequencing
This repository contains code needed to reproduce the analyses shown in Stuart et al. (2022), Nature Biotechnology
Mo...
BSgenome.Hsapiens.UCSC.hg38
EnsDb.Hsapiens.v86
tabix
Rsamtools
tximport
bedGraphToBigWig
BEDTools
Biopython
Bwa-mem2
Cutadapt
DeepTools
GenomeInfoDb
GenomicRanges
patcHwork
Quant
Salmon
SAMtools
Seurat
Signac
Snakemake
SummarizedExperiment
dplyr
future
ggplot2
ggtern
Matrix
RANN
RColorBrewer
RcppRoll
pysam
SeuratWrappers
Processing pipeline for public multiome and scATAC-seq immune datasets
Processing pipeline for public single-cell epigenomic immune datasets. All the required dependencies needed to run the workfl...