All Published Workflows

3 workflows that have been reviewed and published

cageseq
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CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.
public

public

CAGE-seq pipeline . nf-core/cageseq is a bioinformatics analysis pipeline used for CAGE-seq sequencing data. The pipel...
Alignment paraclu bedGraphToBigWig BEDTools Bowtie 2 Cutadapt FastQC MultiQC Nextflow SAMtools SortMeRNA STAR Sequence analysis
Free
24
ml-phylogenetic-reconstruction
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ML phylogenetic reconstruction
public

public

Phylogenetic reconstruction using genome-wide and single-gene alignment data. Here we use maximum likelihood reconstruction p...
Alignment clipkit ASTRAL Galaxy IQ-TREE PhyKIT WorkflowHub Sequence assembly
Free
aspicov
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ASPICov: Automated and Standardized Pipeline for Identification of SARS-Cov2 nucleotidic Variants
public

public

ASPICov was created to provide biologists with a fast, reliable, and comprehensive analysis of NGS SARS-Cov2 samples. This ve...
Alignment Annotation Variant calling Variant filtering bamclipper tabix ASPICov BamTools BCFtools BEDTools BWA fastp FastQC FreeBayes IGVtools MultiQC Nextflow PRINSEQ QUAST SAMtools Singularity Hub snpEff SnpSift Trimmomatic WorkflowHub Genomics
Free
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