All Published Workflows
7 workflows that have been reviewed and published
Amplicon sequence processing workflow using QIIME 2 and Snakemake
Tourmaline is an amplicon sequence processing workflow for Illumina sequence data that uses QIIME 2 and the software pack...
Workflow dervied form https://github.com/snakemake-workflows/rna-seq-star-deseq2 for multi condition Deseq2 and enrichment analyis
Snakemake workflow for running differential expression and enrichment analyses for experimental
setups with multiple groups o...
org.Mm.eg.db
CSV
Data
Enrichment analysis
GO-term enrichment data
biomaRt
EnhancedVolcano
OmnipathR
PCAtools
AnnotationHub
BiocParallel
CARNIVAL
clusterProfiler
ComplexHeatmap
Consensus
decoupleR
DESeq2
enrichplot
ensembldb
FeatureCounts
GFFutils
GLUE
GSEA
GSEABase
mitch
MultiQC
Pandas
patcHwork
pheatmap
PIANO
progeny
Snakemake
UpSetR
viper
broom
cowplot
dplyr
ggplot2
ggraph
ggupset
knitr
magrittr
msigdbr
network
openxlsx
plyr
purrr
RColorBrewer
readr
reshape2
scales
snowfall
svglite
tibble
tidygraph
tidyr
tidyverse
visNetwork
Gene expression
The Nextflow pipeline for Splicing Quantitative Trait Loci (sQTL) mapping
A pipeline for splicing quantitative trait loci (sQTL) mapping. Splicing quantitative trait loci mapping is a technique used ...
Optimizing the DLA Collections test process
An example workflow for the Specimen Data Refinery tool, allowing an individual tool to be used
Preparing a data set for Deep Learning from zipped ABR raw data files
This notebook is about pre-processing the Auditory Brainstem Response (ABR) raw data files provided by Ingham et. al to c...
Compute daily and monthly mean from meteorological station measurements
This workflow is used to process timeseries from meteorological stations in Finland but can be applied to any timeseries acco...
RATECE-PLANICA ski station (Slovenia) under CMIP-6 SSP585 condition
Description: SSP-based RCP scenario with high radiative forcing by the end of century. Following approximately RCP8.5 global ...