All Published Workflows

3 workflows that have been reviewed and published

chipseq-pe-main
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ChIP-seq paired-end Workflow
public

public

ChIP-seq paired-end Workflow The workflow needs a single input which is a list of dataset pairs of fastqsanger. adapt...
FASTQ-illumina FASTQ-sanger raw sequence reads Peak calling Report Bowtie 2 Cutadapt Galaxy illumina MACS MultiQC SAMtools WorkflowHub Biological databases
Free
chipseq-sr-main
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ChIP-seq single-read Workflow
public

public

ChIP-seq single-read Workflow The workflow needs a single input which is a list of fastqsanger files. adapters sequen...
FASTQ-sanger raw sequence reads Filtering Report Bowtie 2 Cutadapt Galaxy MACS MultiQC SAMtools WorkflowHub Genomics
Free
cutandrun-main
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CUT&RUN (and CUT&TAG) Workflow
public

public

The workflow needs a single input which is a list of dataset pairs of fastqsanger. adapter sequences: this depends o...
FASTQ-sanger CleanEx dataset code Peak calling Quality control report BEDTools Bowtie 2 Cutadapt Galaxy MACS MultiQC SAMtools WorkflowHub Genomics
Free