All Published Workflows

2 workflows that have been reviewed and published

load-ome-zarr-image-with-labels-from-a-public-s3-r
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Load ome.zarr Image with labels from a public S3 repository, analyze using StarDist and compare results
public

public

The image is referenced in the paper "NesSys: a novel method for accurate nuclear segmentation in 3D" published August 2019 i...
dhf Zarr autolog idr-py APICURON CITE-sort hypeR ontoisobsolete scikit-learn WorkflowHub WU-CRISPR YeastMine dask ipywidgets matplotlib numpy zarr Electron microscopy
Free
10
cromast-a-workflow-for-assessing-protein-domain-cl
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CroMaSt: A workflow for assessing protein domain classification by cross-mapping of structural instances between domain databases and structural alignment
public

public

CroMaSt: A workflow for assessing protein domain classification by cross-mapping of structural instances between domain datab...
CATH domain ID dhf JSON Fold recognition arvados-cwl-runner bioconductor-cmap2data perl-lwp-protocol-https perl-net-ftp APICURON CITE-sort DE-Sim MLMC ontoisobsolete protexcluder TAGOPSIN UPIMAPI WorkflowHub WU-CRISPR YeastMine Biological databases
Free
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