All Published Workflows
4 workflows that have been reviewed and published
Snakemake workflow for metagenomic classification with Kraken2
A Snakemake pipeline wrapper of the Kraken2 short read metagenomic classification software, with additional tools for analysi...
VGP HiFi phased assembly with hifiasm and HiC data workflow
Performs Long Read assembly using PacBio data and Hifiasm. Part of VGP assembly pipeline. This workflow generate a phased assembly.
VGP hybrid scaffolding with HiC data
Performs scaffolding using HiC Data. Part of VGP assembly pipeline. The scaffolding can be performed on long read assembly co...
VGP HiFi phased assembly with hifiasm and HiC data
Performs Long Read assembly using PacBio data and Hifiasm. Part of VGP assembly pipeline. This workflow generate a phased assembly.