All Published Workflows

3 workflows that have been reviewed and published

medipipe
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MEDIPIPE: (cf)MeDIP-seq Data QC and Analysis Pipeline (v1.1.0)
public

public

The MEDIPIPE is designed for automated end-to-end quality control (QC) and analysis of (cf)MeDIP-seq data. The pipeline start...
File format name Sequence analysis tabix umi_tools BEDTools FastQC Picard SAMtools Snakemake Data quality management
Free
33
bam-to-fastq-qc-v1-0
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Conversion and Quality Control Workflow for BAM to FASTQ Data (Version 1.0)
public

public

Please see the Genome assembly with hifiasm on Galaxy Australia guide. The workflow & the doc_guidelines template used ar...
BAM FASTQ File format name Sequence alignment conversion Sequencing quality control File format name FastQC Galaxy Picard SAMtools WorkflowHub Sequence assembly
Free
sars-cov-2-pe-illumina-artic-ivar-analysis-sars-co
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COVID-19 sequence analysis on Illumina Amplicon PE data
public

public

COVID-19 sequence analysis on Illumina Amplicon PE data sars-cov-2-pe-illumina-artic-ivar-analysis/SARS-COV-2-ILLUMINA-AMPLIC...
File format name Sequence Sequence analysis Sample ID nextclade usher BWA fastp Galaxy iVar MultiQC nextstrain.org Pangolin QualiMap SAMtools snpEff WorkflowHub Sequence analysis
Free