All Published Workflows

2 workflows that have been reviewed and published

bactprep
Show Details View Workflow
Flexible workflow designed for bacterial WGS analyses (annotation, core/pan-genome reconstruction, phylogeny)
public

public

This pipeline is written specifically for annotating the bacteria whole genome sequences (WGS) . The pipeline handles mul...
Gene identifier Genome annotation Annotation track BEDTools Biopython IQ-TREE metaprokka Pandas PIRATE Roary seqkit Snakemake snippy matplotlib pyLabLib Phylogeny
Free
40
bridgedb-tutorial-gene-hgnc-name-to-ensembl-identi
Show Details View Workflow
BridgeDb workflow: Gene HGNC name to Ensembl identifier
public

public

This tutorial explains how to use the BridgeDb identifier mapping service to translate HGNC names to Ensembl identifiers. Thi...
JSON Gene identifier Mapping Ontology mapping Pandas ipython matplotlib requests seaborn Data identity and mapping
Free
15