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snakemake_haps
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A snakemake workflow for high-throughput amplicon sequencing
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public

This is a snakemake workflow for generating a list of variants (Single Nucleotide Polymorphisms- SNPs) from amplicon sequenci...
Haplotype map Haplotype mapping Quality control report tabix BCFtools BEDTools BWA FastQC FreeBayes MultiQC pyfasta QualiMap SAMtools Snakemake Trimmomatic VCFtools Polymorphisms
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