All Published Workflows

2 workflows that have been reviewed and published

phytopipe
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Plant Pathogen Detection Pipeline (PhytoPipe) for RNA-seq Data
public

public

# PhytoPipe: A Phytosanitary Pipeline for plant pathogen detection and diagnosis using RNA-seq data PhytoPipe is an open-sour...
RNA sequence Sequence read processing Sequence report bwakit crass Bowtie 2 BWA cloudSPAdes metaspades MultiQC MUMmer4 plasmidspades QUAST rnaspades RVDB-prot seqtk Snakemake SPAdes Trimmomatic Plant biology RNA-Seq
Free
1
rna-sequencing-data-obtained-from-organisms-with-a
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RNA sequencing data obtained from organisms with a reference genome and annotation followed by a prediction step of editing sites using RDDpred
public

public

vibbits/rnaseq-editing is a bioinformatics pipeline that can be used to analyse RNA sequencing data obtained from organism...
FASTQ RNA sequence Quantification RNA family report bioconductor-dupradar preseq ucsc-bedclip umi_tools bedGraphToBigWig BEDTools DESeq2 FastQC FeatureCounts gffread GFFutils HISAT2 MultiQC Nextflow Picard QualiMap Quant RSEM Salmon SAMtools SortMeRNA STAR StringTie Trimmomatic RDDpred Trim_Galore RNA-Seq
Free
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