All Published Workflows

3 workflows that have been reviewed and published

bioinformaticpipelinecnn
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Genetic pipeline to detect variants from a genome of reference
public

public

Genetic pipeline inspired by Google's DeepVariant in order to detect cancer-causing alleles. Snakemake workflow, CNN with Ker...
VCF Reference sample report Variant calling genetic variants SAMtools Singularity Hub Snakemake rename Genomics
Free
13
imputepipeline
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A Snakemake pipeline to prepare binary PLINK files for the Michigan Imputation Server.
public

public

A Snakemake pipeline to prepare, impute and process binary PLINK files on the Michigan/TOPMed Imputation Servers. Anacond...
Genome build identifier JSON Reference sample report Imputation Report flippyr BCFtools cyvcf2 pLink pyfaidx Snakemake VCFtools chunks requests Genomics
Free
27
sbmfcv
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Cross validation workflow of Semi-binary Matrix Factorization (SBMF)
public

public

Cross validation workflow of Semi-binary Matrix Factorization (SBMF) SBMFCV searches for the optimal hyper-parameters (ra...
Reference sample report Cross-assembly Matrix LAmbDA Snakemake Semi-binary Matrix Factorization
Free
26