All Published Workflows

2 workflows that have been reviewed and published

rnafusion
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RNA-seq analysis pipeline for detection gene-fusions
public

public

nf-core/rnafusion is a bioinformatics best-practice analysis pipeline for RNA sequencing analysis pipeline with curated li...
Sequence variations Sequence analysis Data gatk squid Arriba Bedops fastp FastQC gtftogenepred kallisto MultiQC Nextflow Picard Pizzly QualiMap Quant SAMtools STAR STAR-Fusion StringTie RNA-Seq Sequence analysis
Free
85
raredisease
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Call and score variants from WGS/WES of rare disease patients.
public

public

Introduction Pipeline summary Usage Pipeline output Credits Contributions and Su...
Sequence variations Variant calling gatk hmtnote manta peddy rhocall smncopynumbercaller tabix BCFtools BWA Bwa-mem2 ExpansionHunter Denovo FastQC haplocheck HaploGrep mosdepth MultiQC Picard QualiMap SAMtools Sentieon DNASeq TIDDIT Variant Effect Predictor (VEP) vcfanno GENMOD GLnexus Stranger SVDB wigToBigWig Rare diseases Whole genome sequencing
Free
194