All Published Workflows

5 workflows that have been reviewed and published

methplotlib
Show Details View Workflow
Plotting tools for nanopore methylation data
public

public

This script generates a browser view on a window using data from i) nanopolish , either as methylation calls or methylati...
GTF Text data Methylation analysis Plot nanopolish Snakemake nanopore
Free
3
tytus
Show Details View Workflow
TYTUS - UBCS statistics calculation tool
public

public

Software used for calculatioin of the UBCS Statistics. Results were presented during talk "Revised time estimation of the anc...
Text data Statistical calculation Report ucsc-liftover BEDTools Biopython rtracklayer SAMtools Snakemake utils sndsw Data acquisition
Free
9
stacks-rad-seq-de-novo-workflow
Show Details View Workflow
Stacks RAD-seq de novo workflow
public

public

workflow-denovo-stacks These workflows are part of a set designed to work for RAD-seq data on the Galaxy platform, using the ...
Text data Sequence clustering File format name Galaxy Stacks WorkflowHub Population genomics
Free
stacks-rad-seq-reference-guided-workflow
Show Details View Workflow
Stacks RAD-seq reference-guided workflow
public

public

workflow-ref-guided-stacks These workflows are part of a set designed to work for RAD-seq data on the Galaxy platform, using ...
BAM Map Text data Sequence clustering Map data Bwa-mem2 Galaxy MultiQC SAMtools Stacks WorkflowHub Population genomics
Free
pacbio-hifi-genome-assembly-using-hifiasm-v2-1
Show Details View Workflow
PacBio HiFi genome assembly using hifiasm v2.1
public

public

Please see the Genome assembly with hifiasm on Galaxy Australia guide. The workflow & the doc_guidelines template used ar...
Text data Genome assembly Sequence assembly validation Sequence assembly visualisation File format name Image Bandage Galaxy HiFiAdapterFilt WorkflowHub Sequence assembly
Free