All Published Workflows

FASTQ raw sequence reads Clustering Histogram isonclust isonclust2 pychopper Snakemake De Novo

JSON CleanEx dataset code Clustering Text mining report bigslice refseq_masher antiSMASH Biopython cblaster CheckM Diamond eggNOG-mapper v2 FastANI metaprokka MLST Pandas Peppy Roary seqfu Snakemake alive-progress gtdbtk matplotlib ncbi-genome-download networkx numpy plotly PyYAML requests Comparative genomics

Database metadata Clustering Heat map ComplexHeatmap Pandas Patchwork Snakemake ggplot2 Epigenetics

Resource metadata Clustering Report bioawk prodigal antiSMASH Biopython Diamond eggNOG-mapper v2 hmmsearch (genouest) MCL metaprokka MMseqs Pandas Snakemake data.table dplyr ggplot2 plyr readr reshape2 stringr tidyverse Comparative genomics

Data Clustering Sequence read processing Plot umap Galaxy SCANPY scRNA-Seq WorkflowHub Sequence analysis

FASTQ paired sequencing data Clustering Gene expression matrix Sample annotation ANN-SoLo Galaxy SCANPY WorkflowHub scRNAseq data processing

JSON PDB Clustering biobb_structure_utils biobb_analysis biobb_flexdyn biobb_flexserv biobb_gromacs biobb_io concoord nolb Gromacs IMOD NGLview NMA Pandas ProDy CPPTRAJ biobb-analysis biobb-flexdyn biobb-flexserv biobb-gromacs biobb-io biobb-structure-utils ipython ipywidgets numpy plotly simpletraj Protein structure analysis

FASTQ raw sequence reads Clustering genetic variants fastp WorkflowHub multi-omics data analysis