All Published Workflows
5 workflows that have been reviewed and published
SigMa is a probabilistic model for the sequential dependencies of mutation signatures
This repository contains the source code for SigMa (Signature Markov model) and related experiments. SigMa is a probabilistic...
A simple example snakemake workflow
A simple snakemake workflow comparing three genomes. Run it like so:
snakemake -j 4 --use-conda This repo provides a snakem...
Genome-to-genome analysis reveals associations between human and mycobacterial genetic variation in tuberculosis patients from Tanzania
Preprint: https://doi.org/10.1101/2023.05.11.23289848 Full summary statistics: https://doi.org/10.5281/zenodo.6373034 Reporte...
Analysis of Chromosome Conformation Capture data (Hi-C)
nf-core/hic is a bioinformatics best-practice analysis pipeline for Analysis of Chromosome Conformation Capture data (Hi-C...
Jupyter Notebook Mutation Free Energy Calculations using BioExcel Building Blocks (biobb)
Mutation Free Energy Calculations using BioExcel Building Blocks (biobb)
Based on the official pmx tutorial . This tu...