All Published Workflows

3 workflows that have been reviewed and published

phact
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This is a phylogeny workflow for batch submission to HPC cluster built with Slurm queue manager
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PHACT, PH ylogeny- A ware C omputation of T olerance (for amino acid substitutions), is a computational frame...
Query script Multiple sequence alignment Phylogenetic tree raxml-ng APE Bio3D Snakemake trimAl dplyr stringr ete3 Phylogeny
Free
17
snakemake-alignment_phylogeny
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Houses a snakemake workflow used for multiple sequence alignment and maximum likelihood phylogeny construction of genes or proteins. Originally used to study sex determination genes in mosquitoes.
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This snakemake file contains a workflow allowing the creation of MAFFT alignments and RAxML phylogenies. Inputs can either be...
Gene ID Multiple sequence alignment Phylogenetic tree raxml-ng MAFFT API (EBI) Snakemake trimAl Phylogeny
Free
8
genomics-mrca-analysis
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Genomics - Dating the most recent common ancestor (MRCA) of SARS-CoV-2
public

public

Dating the most recent common ancestor (MRCA) of SARS-CoV-2. The workflow is used to extract full length sequences of SARS-Co...
Multiple sequence alignment Galaxy MAFFT API (EBI) WorkflowHub Genomics
Free