All Published Workflows

Sample annotation RNA-Seq analysis Count matrix bcl2fastq-nextseq demultiplexer FastQC MultiQC Pandas SCANPY Snakemake cellranger anndata helpers matplotlib scvi RNA-Seq

JSON RNA-Seq analysis BBMap Biopython Bowtie 2 BWA DESeq2 eggNOG-mapper v2 FastQC htseqcount Pandas SAMtools Snakemake PyYAML RNA-Seq Sequence analysis

DDBJ accession GEO accession number FASTQ SRA format RNA-Seq analysis synapseclient Sequence analysis

bigWig RNA-Seq analysis bioconductor-dupradar bioconductor-tximeta preseq ucsc-bedclip umi_tools bedGraphToBigWig BEDTools DESeq2 fastp FastQC FeatureCounts gffread GFFutils HISAT2 MultiQC Picard QualiMap Quant RSEM Salmon SAMtools SortMeRNA STAR StringTie Trim_Galore RNA Sequence analysis

RNA-Seq analysis biomaRt EnhancedVolcano scp tximport DESeq2 edgeR FastQC FeatureCounts HISAT2 htseqcount MultiQC mygene Pandas QualiMap Quant Salmon SAMtools Snakemake hash plotscale yaml extglob numpy PyYAML Trim_Galore RNA-Seq

RNA-Seq analysis FastQC kallisto Snakemake STAR oschmod RNA RNA-Seq

CWL RNA-Seq analysis BBMap fastp FastQC kraken2 Krona Quant RNA-Seq

ID list RNA-Seq analysis Structure report Galaxy WorkflowHub RNA-Seq