All Published Workflows

4 workflows that have been reviewed and published

sd-divergence — Show Details View Workflow

SD divergence analysis for Vollger et al., 2023

public

This is a snakemake for analyzing variants from assemblies aligned to CHM13 v1.1. See run.sh for how to execute. However ...

Sample annotation Sequence assembly genetic variants csvtk bedGraphToBigWig BEDTools Pandas Snakemake data.table dplyr ggplot2 tidyverse tzdb vroom Sequence analysis

Free

41

genome-assessment-post-assembly-v1-1 — Show Details View Workflow

Genome assessment post assembly v1.1

public

Please see the Genome assessment post assembly guide. The workflow & the doc_guidelines template used are supported by th...

FASTQ raw sequence reads Sequence assembly Quality control report BUSCO Galaxy Merqury Meryl QUAST WorkflowHub Sequence assembly

Free

Show Details View Workflow

VGP genome profile analysis

public

Create Meryl Database used for the estimation of assembly parameters and quality control with Merqury. Part of the VGP pipeline.

Gene ID Sequence assembly Histogram BUSCO Galaxy Meryl QUAST WorkflowHub Sequence assembly

Free

mc_covid19like_assembly_reads — Show Details View Workflow

Assembly of SARS-CoV-2 genome performed using Unicycler and the SPAdes assemblers

public

MC_COVID19like_Assembly_Reads This WF is based on the official Covid19-Galaxy assembly workflow as available from https://c...

DNA sequence Sequence assembly Data File name Bowtie 2 fastp Galaxy SPAdes Unicycler WorkflowHub Sequence analysis Sequence assembly

Free