All Published Workflows
8 workflows that have been reviewed and published
"DTR Phage Genome Polishing Pipeline"
DTR phage pipeline The DTR phage pipeline is a Snakemake pipeline for obtaining polished, full-length dsDNA bacteriophage gen...
Epidemiological Data Subsampling Pipeline
subsampler A pipeline for subsampling genomic data based on epidemiological time series data. If you use this tool in a publi...
Plant Pathogen Detection Pipeline (PhytoPipe) for RNA-seq Data
# PhytoPipe: A Phytosanitary Pipeline for plant pathogen detection and diagnosis using RNA-seq data PhytoPipe is an open-sour...
Single Cell Analysis with Snakemake Pipelines: From Data Download to Processing
Snakemake Pipelines for Single Cell. This pipeline is based on snakemake . It is probably worth reading through the intro...
Endogenous Retrovirus Expression Pipeline for Human and Mouse for use with bulk RNA
Endogenous Retrovirus Expression Pipeline for Human and Mouse
This is t
SLAMSeq processing and analysis pipeline
nf-core/slamseq is a bioinformatics analysis pipeline used for SLAMSeq sequencing data. The workflow processes SLAMSeq...
Basic processing of a QC-filtered Anndata Object. (scRNAseq_QC to Basic Processing)
Basic processing of a QC-filtered Anndata Object. UMAP, clustering e.t.c
BatchConvert: Efficient Image Data Conversion into OME-TIFF or OME-Zarr Formats with Parallel Processing and Automated Storage Transfer
BatchConvert A command line tool for converting image data into either of the standard file formats OME-TIFF or OME-Zarr. The...