All Published Workflows
5 workflows that have been reviewed and published
A metatranscriptomic pipeline optimized for the study of microeukaryotes.
This README file is a brief introduction to eukrhythmic . For more detailed information, please visit the readthedo...
Snakemake pipeline for de novo transcriptome assembly with 454 reads
This is a workflow to assemble RNA reads from 454 into a transcriptome. The procedure is as follows:
Quality control
...
A snakemake pipeline to generate the transcriptomic signatures of drug susceptibility used in beyondcell
The purpose of this repository and the snakemake pipeline associated with it is
to regenerate the whole collection of transcr...
Cleaning transcriptome annotations with ab initio assemblers
AnnotationCleaner is designed to automate the construction of ab initio assembled transcriptomes using several different tool...
Metagenome and metatranscriptome assembly in CWL
This repository contains two workflows for metagenome and metatranscriptome assembly of short read data. MetaSPAdes is used a...