All Published Workflows
5 workflows that have been reviewed and published
Score and compare multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s)
A snakemake-wrapper for evaluating de novo bacterial genome assemblies, e.g. from Oxford Nanopore (ONT) or Illumina seque...
"DTR Phage Genome Polishing Pipeline"
DTR phage pipeline The DTR phage pipeline is a Snakemake pipeline for obtaining polished, full-length dsDNA bacteriophage gen...
Imputation workflow for low coverage whole genome sequencing data
This workflow is for imputation using low coverage whole genome sequencing data with QUILT . Also, it can perform benchma...
DNA-seq and Neoantigens prediction
Snakemake workflow for neoantigen prediction.
This workflow is still in development
This snakemake pipeline implement...
GEN-ERA toolbox suite of Nextflow-Singularity workflows
The GEN-ERA toolbox is a suite of Nextflow-Singularity workflows designed for comparative genomics of bacteria and small euka...