All Published Workflows

2 workflows that have been reviewed and published

flu-forecasting
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Integrating genotypes and phenotypes improves long-term forecasts of seasonal influenza A/H3N2 evolution
public

public

John Huddleston1,2, John R. Barnes3, Thomas Rowe3, Xiyan Xu3, Rebecca Kondor3, David E. Wentworth3, Lynne Whittaker4, Burcu ...
JSON CleanEx dataset code Annotation phenotype report Augur Biopython Consensus FORECasT IQ-TREE Pandas Snakemake matplotlib numpy scipy seaborn statsmodels TreeTime Population genomics
Free
113
partial-de-novo-workflow-c-s-g-pops-only
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Partial de novo workflow: cstacks-sstacks-gstacks-pops only
public

public

workflow-partial-cstacks-sstacks-gstacks These workflows are part of a set designed to work for RAD-seq data on the Galaxy pl...
Map Sequence clustering phenotype report Haplotype map Galaxy Stacks WorkflowHub Population genomics
Free