All Published Workflows

4 workflows that have been reviewed and published

stainedglass
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Make colorful identity heatmaps of genomic sequence
public

public

This is a repository for making colorful identity heatmaps of genomic sequence. To install you can follow the directions on t...
Sample annotation Chromatographic alignment Heat map cooler BEDTools BWA Minimap2 SAMtools Snakemake Genomics
Free
22
unsupervised_analysis
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A general purpose Snakemake workflow to perform selected unsupervised analyses and visualizations of high-dimensional data.
public

public

A general purpose Snakemake workflow to perform selected unsupervised analyses and visualizations of high-dimensional (no...
Database metadata Clustering Heat map ComplexHeatmap Pandas Patchwork Snakemake ggplot2 Epigenetics
Free
3
biotranslator-workflow
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BioTranslator Workflow
public

public

BioTranslator performs sequentially pathway analysis and gene prioritization: A specific operator is executed for each task t...
Gene ID Pathway analysis Heat map BioTranslator Galaxy WorkflowHub Genomics
Free
rna-seq
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RNA-Seq pipeline
public

public

RNA-Seq pipeline Here we provide the tools to perform paired end or single read RNA-Seq analysis including raw data qu...
FASTQ raw sequence reads Quantification Heat map bedGraphToBigWig BEDTools Cutadapt DeepTools FastQC FeatureCounts MultiQC QualiMap SAMtools STAR RNA-Seq
Free
27