All Published Workflows

2 workflows that have been reviewed and published

rna-seq-star-deseq2
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RNA-seq workflow using STAR and DESeq2
public

public

This workflow performs a differential gene expression analysis with STAR and Deseq2. The usage of this workflow is described ...
raw sequence reads Gene expression profiling ID list snakemake-wrapper-utils biomaRt PCAtools BiocParallel BWA Cutadapt DESeq2 GFFutils MultiQC Pandas SAMtools Snakemake STAR cli stringr tidyverse RNA-Seq
Free
41
cosifer
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COSIFER - COnSensus Interaction Network InFErence Pipeline
public

public

Inference framework for reconstructing networks using a consensus approach between multiple methods and data sources. Manica...
Expression data Regression analysis ID list COSIFER Molecular genetics
Free
1