All Published Workflows

2 workflows that have been reviewed and published

hribo
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HRIBO: High-throughput annotation by Ribo-seq workflow for analyzing bacterial Ribo-seq data
public

public

We present HRIBO (High-throughput annotation by Ribo-seq), a workflow to enable reproducible and high-throughput analysis of ...
Sequence Sequence annotation ORF ID gatk ucsc-bigwigtowig BEDTools Cutadapt FastQC FeatureCounts GFFutils MultiQC Picard SAMtools Snakemake wigToBigWig bacterial assembly and annotation
Free
154
ideel
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Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes
public

public

This repo builds on code by Mick Watson who wrote a blog post and follow up about a quick way to test the viabili...
bacterial Genome assembly ORF ID prodigal Diamond Snakemake ggplot2 Genomics
Free
4