All Published Workflows
6 workflows that have been reviewed and published
A straightforward bioinformatic pipeline for detecting a bacterial strain in one or more metagenome(s).
A straightforward bioinformatic pipeline for detecting the presence of a bacterial strain in one or more metagenome(s). Strai...
This is a phylogeny workflow for batch submission to HPC cluster built with Slurm queue manager
PHACT, PH ylogeny- A ware C omputation of T olerance (for amino acid substitutions), is a computational frame...
A snakemake for GTDB-tk
It uses GTDB-tk to taxonomically annotate your genomes and to build a tree. Run as follows:
dbdir="databases"
genome_dir="gen...
A `snakemake` workflow for building gene trees
A snakemake workflow for phylogenomic analysis of genome clusters.
kizuchi is a
snakemake
workflow for buildi...
Phylogenomics tutorial based on BUSCO genes
Phylogenomics tutorial based on BUSCO genes
Disclaimer
To follow the demo and make the most of it, it helps if you ha...
Houses a snakemake workflow used for multiple sequence alignment and maximum likelihood phylogeny construction of genes or proteins. Originally used to study sex determination genes in mosquitoes.
This snakemake file contains a workflow allowing the creation of MAFFT alignments and RAxML phylogenies. Inputs can either be...