All Published Workflows

2 workflows that have been reviewed and published

covid-19-signal
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Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.
public

public

This is a complete standardized workflow the assembly and subsequent analysis for short-read viral sequencing. This core work...
FASTQ-illumina Query script Genome assembly Taxonomic classification tabix BCFtools BEDTools breseq BWA Consensus FastQC FreeBayes iVar kraken2 Pangolin QUAST SAMtools Snakemake vt Trim_Galore COVID19 Risk Mitigation
Free
31
taxonomic_profiling_pipeline
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taxonomic_profiling_pipeline
public

public

This pipeline was developed using the Snakemake workflow management system You would need to have the Snakefile, the en...
FASTQ Sample annotation Sequencing quality control Taxonomic classification fastp FastQC Kraken kraken2 Krona MultiQC Snakemake Taxonomy
Free
11