All Published Workflows
27 workflows that have been reviewed and published
![tourmaline](https://media.bioworkflows.com/bioworkflows/public_preview/ba7e9ae8b3c64d065e3767a7ce62f497c0f91725ac3ebac47bd87c577f80243f.jpg)
Amplicon sequence processing workflow using QIIME 2 and Snakemake
Tourmaline is an amplicon sequence processing workflow for Illumina sequence data that uses QIIME 2 and the software pack...
![unite-train](https://media.bioworkflows.com/bioworkflows/public_preview/62b4af9bcdb407c577993e2f3a1ed9fe09effa6364ac0da7ca25f4f8c5763c3c.jpg)
🍄 Qiime2 ITS classifiers for the UNITE database
A pipeline to build Qiime2 taxonomy classifiers for the UNITE database . Set up:
Install Mambaforge and c...
![cascabel](https://media.bioworkflows.com/bioworkflows/public_preview/a2df8d8c46e7dad17f372775df60aaf13d4ed5a4b9ccefb69264ffd46c8857b5.jpg)
![snakemake-workflow-qiime2](https://media.bioworkflows.com/bioworkflows/public_preview/60343cbf2a14eb8ccbd1be09a9275c7628914c6cbdf4c108d39db28aee2ac55e.jpg)
Snakemake pipeline for 16S, 18S and ITS metagenomics using qiime2
This workflow performs microbiome analysis using QIIME2 and PICRUSt2 for functional annotation. Functional annotation is only...
![microbiome16s_pipeline](https://media.bioworkflows.com/bioworkflows/public_preview/5aa5a9fa315ea55e1c3840906fa7d79b63738e0b8dc2c93825511a60b3034bee.jpg)
Reproducible Scalable Pipeline For Amplicon-based Metagenomics (RSP4ABM) is a bioinformatic pipeline designed for convenient, reproducible and scalable amplicon-based metagenomics
This is a comprehensive pipeline for amplicon-based metagenomics integrating in a Snakemake workflow the best functions of ...
![snakecharmer](https://media.bioworkflows.com/bioworkflows/public_preview/7913702f59d6fcce043b2a7591be2a867ff212a209d3fb67e3266e34b44e0314.jpg)
Amplicon data processing workflows for diversity analysis
This software makes use of the workflow management system Snakemake to build and integrate different amplicon workflows a...
![16s](https://media.bioworkflows.com/bioworkflows/public_preview/1dec2254ca8148999553ac635b8f608d2b9b72dd7665255b23124bd2739bf15e.jpg)
16S pipeline using qiime2 created with snakemake
Qiime2 workflow for 16S analysis created with snakemake.
Ann-Kathrin Brüggemann (@AKBrueggemann)
Thomas Battenfeld (@...
![avengers-assemble](https://media.bioworkflows.com/bioworkflows/public_preview/718828b9a35f47affe490155ec3782df5bdfc6cfc9c6cc8d0f1dbc1aa22a96fa.jpg)
Microbiome Analysis Workflow based on a qiime2
This repository contains the analysis workflow for Debelius et al (doi: 10.1101/2021.03.23.436606 ). The analysis was don...
![qiime_pipeline](https://media.bioworkflows.com/bioworkflows/public_preview/3ba5d13f2008eaea9d75f38e897463c0976ba30e0e2bc5ace136669bfb64f1e3.jpg)
CGR's QIIME microbiome pipeline
This is the Cancer Genomics Research Laboratory's (CGR) microbiome analysis pipeline. This pipeline utilizes QIIME2 to cl...
![biof501termproject](https://media.bioworkflows.com/bioworkflows/public_preview/03ceebc230f78621cbd55f49793b321d762ab326c392f4c93336c408efee489f.jpg)
![nanoclass](https://media.bioworkflows.com/bioworkflows/public_preview/9ff3834117b2f476511188eff5f6f15e053206537e37d9dca53dc8c6cc2e1245.jpg)
NanoClass: A Taxonomic Meta-Classifier for Oxford Nanopore Amplicon Sequencing Data
NanoClass is a taxonomic meta-classifier for 16S/18S amplicon sequencing data generated with the Oxford Nanopore MinION. With...
![env-diversity](https://media.bioworkflows.com/bioworkflows/public_preview/7913702f59d6fcce043b2a7591be2a867ff212a209d3fb67e3266e34b44e0314.jpg)
Amplicon data processing workflows for diversity analysis
This software makes use of the workflow management system Snakemake to build and integrate different amplicon workflows a...