All Published Workflows
11 workflows that have been reviewed and published
scTensor Experiments: Data Preparation and Reproduction
Synthetic datasets: synthetic_datasets/data/README.md
Real datasets: real_datasets/data/README.md
Bash: GNU ba...
Integration of AISD School Catchments and Census Tract Data Workflow
The purpose of this repository is to merge census tract and AISD shapefile data, in order to approximate the number of elemen...
TYTUS - UBCS statistics calculation tool
Software used for calculatioin of the UBCS Statistics.
Results were presented during talk "Revised time estimation of the anc...
PhyloFunDB pipeline for specific gene database construction and update.
Pipeline for specific gene database construction and update.
Introduction The pipeline is based on the following workflow...
Neo4j Data Integration and Build Pipeline for EpiGraphDB Graph Creation
Neo4j data integration and build pipeline - https://github.com/elswob/neo4j-build-pipeline This pipeline originated from the ...
Neo4j Data Integration and Build Pipeline for EpiGraphDB: Graph Creation from Multiple Data Sources
Neo4j data integration and build pipeline - https://github.com/elswob/neo4j-build-pipeline This pipeline originated from the ...
LST Data Selection and Source Catalog Download
lst-data-selection Archived in favour of https://github.com/nbiederbeck/lst-agn-analysis Download the LST Source Catalog (run...
Snakemake Workflow for tsABC Method with A. thaliana Data Application
This git provides a snakemake workflow to run tsABC, the method introduced in our paper doi: https://doi.org/10.1101/2022.07....
Using Snakemake for Parameterized Workflow Execution in Python
This repository contains the code for: https://munjungkim.github.io/files/ic2s2_2023_03_02_disruptiveness.pdf Since the curre...
Single-Cell and Single-Nuclei Data Integration Workflow
Table of Contents
Environment setup
Managing R packages with renv
Snakemake/conda setup
...
Dose-Response Curve Fitting Workflow for Biochemical Assay Data with HCS Extension
This workflow can be used to fit dose-response curves from normalised biochemical assay data (%Inhibition) using the HCS exte...