All Published Workflows
11 workflows that have been reviewed and published
Classifier for PEDIA Datasets
General information
Download dataset
Evaluation
PEDIA cohort
Deep-Gestalt publication te...
Snakemake workflow as a module to test reproducibility
Toy Snakemake workflow to be deployed as a module to test reproducibility
Running a Hi-C Data Processing Pipeline Using Snakemake
Description of individual steps in pipeline
1. run_bwa_mem
2. make_pairs_with_pairtools_parse
3....
Setting Up Dependencies and Conda Environment for trio_call_phase_pipeline
/panguangze/trio_call_phase_pipeline install: dysgu https://github.com/panguangze/dysgu.git master branch pedHap https://gith...
Post-processing Workflow for WRF-Hydro Model Output
You will need to have "Snakemake" installed. The easiest is to create a conda environment
conda create -p /path/to/snakemake_env
co
PISM Experiment Workflow for Data Preprocessing, Model Runs, Tuning, and Postprocessing Using Snakemake
Snakemake workflow for my PISM experiments. This handles input data preprocessing (download, conversion of units, remappin...
Single-Cell Data Test Dataset Generation Workflow
This workflow creates small test datasets for single cell data analyses. The generated data is available in the folders ref...
Data Analysis and Visualization for High-Resolution Hippocampal Perfusion
This repository contains the data analysis code and (visualization) notebooks related to the preprint:
"Novel insights into...
Dose-Response Curve Fitting Workflow for Cell-Based Assay Data with KNIME HCS Extension
This workflow can be used to fit dose-response curves from normalised cell-based assay data (%confluence) using the KNIME HCS...
Toxicity Dose-Response Curve Fitting Workflow with Outlier Removal
Generates Dose-response curve fits on cell-based toxicity data. Outliers of replicate data-sets can be removed by setting a t...