All Published Workflows
5 workflows that have been reviewed and published
Neuroimaging Data Processing Workflow
clinical-atlasreg Inputs:
participants.tsv with target subject IDs
bids folder
other folder containing bids-like ...
canbind2bids - Snakemake workflow for CAN-BIND raw to bids
Author: Ali Khan
Date: Jan 13, 2022 Run full bids conversion with:
snakemake -j1 all_unzip && snakemake -j1 all_bids" Update ...
Pipeline for liver ct analysis
nf-core/liverctanalysis is a bioinformatics best-practice analysis pipeline for quantitative analysis of abdominal CT scans ...
Pipeline for processing spatially-resolved gene counts with spatial coordinates, image data, and optionally single cell RNA-seq data, designed for 10x genomics visium and single cell transcriptomics.
nf-core/spatialtranscriptomics is a bioinformatics analysis pipeline for
Spatial Transcriptomics. It can process and analy...
Object tracking using CellProfiler
Workflow for tracking objects in Cell Profiler: https://training.galaxyproject.org/training-material/topics/imaging/tutoria...