All Published Workflows
11 workflows that have been reviewed and published
"Proteogenomic Approach for Enhanced Virus Identification in Proteomic Analysis"
In Proteomic analysis, Viruses often yield low identification rates, especially on strain level. The aim is the usage of a pr...
Proteomics label-free quantification (LFQ) analysis pipeline
Proteomics label-free quantification (LFQ) analysis pipeline using OpenMS and MSstats, with feature quantification, feature ...
Automated quantitative analysis of DIA proteomics mass spectrometry measurements.
Automated quantitative analysis of DIA proteomics mass spectrometry measurements. nfcore/diaproteomics is a bioinformatics...
Protein 3D structure prediction pipeline
nf-core/proteinfold is a bioinformatics best-practice analysis pipeline for Protein 3D structure prediction pipeline. The ...
Python Protein conformational ensembles generation, building on PDBe-KB
Protein Conformational ensembles generation This tutorial aims to illustrate the process of generating protein conformation...
WOMBAT-Pipelines
wombat-p pipelines is a bioinformatics analysis pipeline that bundles different workflow for the analysis of label-free pr...
MaCProQC: MS-Based Proteomics Quality Assessment Workflow
A workflow for the quality assessment of mass spectrometry (MS) based proteomics analyses
EJP-RD WP13 case-study: CAKUT proteome, peptidome and miRNome data analysis using WikiPathways
In this analysis, we created an extended pathway, using the WikiPathways repository (Version 20210110) and the three -omics...
EJP-RD WP13 case-study: CAKUT peptidome and miRNome data analysis using the DIABLO and PLS-DA methods from the mixOmics R package
For integrative analysis of CAKUT multi-omics data DIABLO method of the mixOmics package (version 6.10.9. Singh et. al. 201...
ORSON: workflow for proteome and transcriptome functional annotation
ORSON combine state-of-the-art tools for annotation processes within a Nextflow pipeline: sequence similarity search (PLAST, ...
IceR - Quantitative Label-Free Proteomics Workflow
Label-free proteomics enables the unbiased quantification of thousands of proteins across large sample cohorts. Commonly used...