All Published Workflows
8 workflows that have been reviewed and published
Structural Variant Detection and Analysis Pipeline for High-Quality Human Genomes using SVDSS
conda install minimap2 pbsv=2.6.2 sniffles=1.0.12 cutesv=1.0.11 svim=1.4.2 dipcall samtools bcftools pysam biopython numpy pa...
Analysis Pipeline for Ribosome Profiling-Based Identification of Open Reading Frames in Bacteria
This repository contains all code to recreate the contents of [RiboReport - Benchmarking tools for ribosome profiling-based i...
Generating K-mer Count-Based Features with mlgenofeatures Snakemake Workflow
The mlgenofeatures Snakemake workflow can be used to create files of k-mer counts from actual or simulated short read dataset...
Sentieon Tools for Alignment and Variant Analysis
The module consists of tools from Sentieon, including alignment, duplicate reads removal, indel realignment, recalibration ta...
Snakemake pipeline for detection limit test from laser-microdissected samples
A Snakemake workflow for assessing detection limit from laser-microdissected samples.
Requirements
git-lfs
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Snakemake Workflow for Quantum Definition of Molecular Structure Analysis
This is the Snakemake workflow for reproducing the data analysis of our paper on a quantum definition of molecular structur...
k-mer similarity analysis pipeline
Compare DNA/RNA/protein sequences on k-mer content . The pipeline is built using Nextflow , a workflow tool to run tas...
GermlineStructuralV-nf: Comprehensive Structural Variant Identification Pipeline for Human Genome Using Multi-Caller Approach
GermlineStructuralV-nf GermlineStructuralV-nf is a pipeline for identifying structural variant events in human Illumina short...