All Published Workflows
5 workflows that have been reviewed and published
Reproducible Gene-Level Association Studies Workflow for Multi-Omic Analysis
This repository contains an entire end-to-end workflow to reproduce gene-level association studies described in:
Zhou, D., ...
Multiomics Integration of Immune-Mediated Monogenic Diseases
This repository contains the code accompanying the article: Rachel Sparks, Dylan C. Hirsch, Nicholas Rachmaninoff, ..., John ...
pd.hugene.1.0.st.v1
Biobase
BiocGenerics
Diamond
GEOquery
limma
oligo
pheatmap
preprocessCore
Salmon
Snakemake
variancePartition
WGCNA
cowplot
data.table
doParallel
dplyr
ggbeeswarm
ggfortify
ggplot2
ggpubr
ggraph
ggrepel
glmnet
gridExtra
MetaIntegrator
openxlsx
plyr
randomForest
RColorBrewer
reshape2
r.jive
tibble
tidygraph
tidyr
tidyverse
zip
multi-omics data analysis
Snakemake workflow that checks the scalability of LAMMPS run on a cluster
The workflow separated to core and node scalability checks. Core scalability checks scalibility on same node.
Node scalabilit...
Multi-omics Data Analysis Pipeline: TF-Prioritizer
1. About TF-Prioritizer This pipeline gives you a full analysis of nfcore chromatine accessibility peak data (ChIP-Seq, ATAC-...
X-omics ACTIONdemonstrator analysis workflow
Here, the ACTIONdemonstrator workflow is made using Nextflow workflow manager. With this workflow, we would like to demonstra...